| GYP6 | YJL044C | GTPase-activating protein (GAP) for the yeast Rab family member, Ypt6p; involved... | GTPase activating protein (GAP)  for Ypt6 | 6 | 13 |  | 0 | 
		
			| GDI1 | YER136W | GDP dissociation inhibitor, regulates vesicle traffic in secretory pathways by r... | GDP dissociation inhibitor | 6 | 25 |  | 0 | 
		
			| YIP3 | YNL044W | Protein localized to COPII vesicles, proposed to be involved in ER to Golgi tran... |  | 4 | 43 |  | 0 | 
		
			| MDR1 | YGR100W | Cytoplasmic GTPase-activating protein for Ypt/Rab transport GTPases Ypt6p, Ypt31... | GTPase activating protein (GAP)  for Ypt6 | 4 | 13 |  | 0 | 
		
			| SGM1 | YJR134C | Protein of unknown function, required for wild-type growth rate on galactose and... |  | 3 | 8 |  | 0.2273 | 
		
			| VPS53 | YJL029C | Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps5... | hydrophilic protein that is peripherally associated with the late Golgi and forms a stable complex with Vps52p and Vps54p | 3 | 18 |  | 0.0632 | 
		
			| ACO1 | YLR304C | Aconitase, required for the tricarboxylic acid (TCA) cycle and also independentl... | aconitase | 3 | 28 |  | 0 | 
		
			| COG2 | YGR120C | Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog... |  | 3 | 45 |  | 0 | 
		
			| YIP1 | YGR172C | Integral membrane protein required for the biogenesis of ER-derived COPII transp... |  | 3 | 28 |  | 0.0657 | 
		
			| RIC1 | YLR039C | Protein involved in retrograde transport to the cis-Golgi network; forms heterod... |  | 3 | 14 | -1.6276 | 0 | 
		
			| COG6 | YNL041C | Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cyt... |  | 3 | 31 |  | 0 | 
		
			| MSB4 | YOL112W | GTPase-activating protein of the Ras superfamily that acts primarily on Sec4p, l... |  | 3 | 11 |  | 0 | 
		
			| YIP4 | YGL198W | Protein that interacts with Rab GTPases; computational analysis of large-scale p... |  | 3 | 26 |  | 0 | 
		
			| YOP1 | YPR028W | Membrane protein that interacts with Yip1p to mediate membrane traffic; overexpr... |  | 3 | 17 |  | 0 | 
		
			| MRS6 | YOR370C | Rab escort protein, forms a complex with the Ras-like small GTPase Ypt1p that is... | rab geranylgeranyltransferase regulatory subunit | 3 | 22 |  | 0.0025 | 
		
			| YTH1 | YPR107C | Essential RNA-binding component of cleavage and polyadenylation factor, contains... | polyadenylation factor subunit | 2 | 32 |  | 0 | 
		
			| SPT7 | YBR081C | Subunit of the SAGA transcriptional regulatory complex, involved in proper assem... | histone acetyltransferase SAGA complex member|transcription factor | 2 | 70 |  | 0.2555 | 
		
			| TAF6 | YGL112C | Subunit (60 kDa) of TFIID and SAGA complexes, involved in transcription initiati... | TATA-binding protein-associated-factor | 2 | 102 |  | 0.0001 | 
		
			| SGF73 | YGL066W | Probable 73 kDa subunit of SAGA histone acetyltransferase complex | Probable 73KkDa Subunit of SAGA histone acetyltransferase complex | 2 | 57 |  | 0.2816 | 
		
			| NGG1 | YDR176W | Transcriptional regulator involved in glucose repression of Gal4p-regulated gene... | genetic and mutant analyses suggest that Ngg1p (Ada3p) is part of two transcriptional adaptor/HAT (histone acetyltransferase complexes, the 0.8 MD ADA complex and the 1.8 MD SAGA complex|transcription factor | 2 | 65 |  | 0.0707 | 
		
			| TAF5 | YBR198C | Subunit (90 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II tran... |  | 2 | 84 |  | 0.0423 | 
		
			| SSU72 | YNL222W | Transcription/RNA-processing factor that associates with TFIIB and cleavage/poly... |  | 2 | 40 |  | 0.0001 | 
		
			| SYC1 | YOR179C | Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a... |  | 2 | 14 |  | 0.1254 | 
		
			| PTA1 | YAL043C | Subunit of holo-CPF, a multiprotein complex and functional homolog of mammalian ... | cleavage factor II (CF II) component|polyadenylation factor I (PF I) | 2 | 60 |  | 0.0203 | 
		
			| PTI1 | YGR156W | Pta1p Interacting protein |  | 2 | 35 |  | 0.2839 | 
		
			| MPE1 | YKL059C | Essential conserved subunit of CPF (cleavage and polyadenylation factor), plays ... |  | 2 | 36 |  | 0 | 
		
			| PFS2 | YNL317W | Integral subunit of the pre-mRNA cleavage and polyadenylation factor (CPF) compl... | polyadenylation factor I (PF I) | 2 | 43 |  | 0 | 
		
			| TRA1 | YHR099W | Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with aci... | ATM/Mec1/TOR1/TOR2-related|NuA4 complex component | 2 | 93 |  | 0.0001 | 
		
			| TAF9 | YMR236W | Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II tran... | TFIID subunit | 2 | 74 |  | 0.1239 | 
		
			| UBP8 | YMR223W | Ubiquitin-specific protease that is a component of the SAGA (Spt-Ada-Gcn5-Acetyl... |  | 2 | 49 | -1.0766 | 0.241 | 
		
			| VPS52 | YDR484W | Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps5... |  | 2 | 12 |  | 0.0322 | 
		
			| VPS54 | YDR027C | Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps5... |  | 2 | 22 |  | 0 | 
		
			| YIF1 | YNL263C | Integral membrane protein required for the fusion of ER-derived COPII transport ... |  | 2 | 39 |  | 0 | 
		
			| YSH1 | YLR277C | Putative endonuclease, subunit of the mRNA cleavage and polyadenylation specific... | cleavage factor II (CF II) component|polyadenylation factor I (PF I) | 1 | 42 |  | 0 | 
		
			| RPL2A | YFR031C-A | Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and ... | ribosomal protein L2A (L5A) (rp8) (YL6) | 1 | 126 |  | 0 | 
		
			| PAP1 | YKR002W | Poly(A) polymerase, one of three factors required for mRNA 3--end polyadenylatio... | poly(A) polymerase | 1 | 46 |  | 0.002 | 
		
			| VAM6 | YDL077C | Vacuolar protein that plays a critical role in the tethering steps of vacuolar m... |  | 1 | 39 |  | 0.0499 | 
		
			| CFT1 | YDR301W | RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in... | 150 kDa protein associated with polyadenylation factor 1 (PF I)|cleavage factor II (CF II) component | 1 | 47 |  | 0 | 
		
			| PEX14 | YGL153W | Peroxisomal membrane protein that is a central component of the peroxisomal prot... | peroxin | 1 | 44 |  | 0.1608 | 
		
			| VPS33 | YLR396C | ATP-binding protein that is a subunit of the homotypic vacuole fusion and vacuol... |  | 1 | 35 |  | 0.14 |