CHEMGRID MOLECULE CARD
BERGAPTEN
BERGAPTEN in ChemGrid: 205 screened assays, 90 with significant responses. Explore chemical identifiers, strain activity and target evidence.
SPE00300546
Explore activity & SONAR
Identity and chemistry
- ChemGrid identifier
- SPE00300546
- Molecular formula
- C12H8O4
- CAS registry number
- 484-20-8
- InChIKey
- BGEBZHIAGXMEMV-UHFFFAOYSA-N
- Libraries
- Spectrum, SPECMTS3, Spectrum_ED
- Other recorded names
- Bergapten
Stored SMILES
COc1c2ccoc2cc2OC(=O)C=Cc21Matched external records: PubChem 2355
Chemical identifiers and library names are reproduced from ChemGrid records. Missing values are omitted.
Measured chemical–genetic activity
205 measurements across 205 distinct library–species–strain assays; 90 assays have at least one significant response (|Z| ≥ 4, p ≤ 0.001, excluding flagged outliers).
Responses are indirect screening phenotypes. They do not establish that a strain gene is a direct molecular target. Strains and timepoints are retained as recorded; these counts are not counts of unique ORFs.
| Strain | Library | Species identifier | Z-score |
|---|---|---|---|
| rad52 | Spectrum | 4932 | -24.82 |
| vps1 | Spectrum | 4932 | -22.21 |
| rom2 | Spectrum | 4932 | -18.81 |
| rpn10 | Spectrum | 4932 | -18.41 |
| ser1 | Spectrum | 4932 | -17.01 |
| mad1 | Spectrum | 4932 | -16.08 |
| arf1 | Spectrum | 4932 | -15.77 |
| bik1 | Spectrum | 4932 | -15.48 |
| tif3 | Spectrum | 4932 | -15.42 |
| rpa49 | SPECMTS3 | 4932 | -14.86 |
| mcm21 | Spectrum | 4932 | -14.75 |
| DUN1 | Spectrum | 4932 | -14.55 |
Spectrum compound-combination identifiers are excluded from this short table. The interactive profile retains the full measurements.
Recorded target evidence and yeast matches
Source annotations are shown separately from SONAR hypotheses. Evidence type and identity matching can vary; consult the linked source and interactive evidence panel.
| Target | Source | Yeast ORF / orthologue |
|---|---|---|
| CBX1 · Chromobox protein homolog 1 | ChEMBL | No stored yeast mapping |
| CYP1A1 · Cytochrome P450 1A1 | ChEMBL | No stored yeast mapping |
| Dyrk1a · Dual specificity tyrosine-phosphorylation-regulated kinase 1A | ChEMBL | No stored yeast mapping |
| ALDH1A1 · Aldehyde dehydrogenase 1A1 | ChEMBL analogue | ALD5 YER073W (ortholog_many2many); ALD3 YMR169C (ortholog_many2many); ALD2 YMR170C (ortholog_many2many); ALD4 YOR374W (ortholog_many2many); ALD6 YPL061W (ortholog_many2many) |
| CBX1 · Chromobox protein homolog 1 | ChEMBL analogue | No stored yeast mapping |
| CYP1A1 · Cytochrome P450 1A1 | ChEMBL analogue | No stored yeast mapping |
| Dyrk1a · Dual specificity tyrosine-phosphorylation-regulated kinase 1A | ChEMBL analogue | No stored yeast mapping |
| EHMT2 · Histone-lysine N-methyltransferase EHMT2 | ChEMBL analogue | SET2 YJL168C (ortholog_many2many) |
| GMNN · Geminin | ChEMBL analogue | No stored yeast mapping |
| IDH1 · Isocitrate dehydrogenase [NADP] cytoplasmic | ChEMBL analogue | IDP1 YDL066W (ortholog_many2many); IDP2 YLR174W (ortholog_many2many); IDP3 YNL009W (ortholog_many2many) |
| KDM4E · Lysine-specific demethylase 4E | ChEMBL analogue | YJR119C (ortholog_one2many) |
| MAPT · Microtubule-associated protein tau | ChEMBL analogue | No stored yeast mapping |
| USP1 · Ubiquitin carboxyl-terminal hydrolase 1 | ChEMBL analogue | UBP13 YBL067C (ortholog_many2many); UBP9 YER098W (ortholog_many2many); UBP8 YMR223W (ortholog_many2many); UBP2 YOR124C (ortholog_many2many) |
Structural activity predictions and SONAR
Stored structural activity predictions are available in the interactive profile, with assay-specific cutoffs and applicability-domain assessments.
SONAR ranks candidate targets through genetic and physical interaction evidence. Structural SONAR uses predicted strain responses; measured SONAR uses experimental responses. These are experimental hypotheses, not confirmed binding targets. Outside-domain predictions are treated as unknown.
Open the complete BERGAPTEN research profile →Sources and provenance
Screening measurements: ChemGrid chemical-genetic datasets. Wildenhain et al., Cell Systems (2015). Target annotations: sources named in the evidence table. Structure and library metadata: stored ChemGrid catalogue records.
Card snapshot: 2026-11-02. Linked interactive views may contain newer data.